Config a manual time source
w32tm /config /manualpeerlist:peers /syncfromflags:manual /update
Ignore KBs that maually set registry entries
Config a manual time source as the top time source in forest
w32tm /config /manualpeerlist:peers /syncfromflags:manual /reliable:yes /update
Detect time difference
w32tm /stripchart /computer:TimeServerName /samples:n /dataonly
Set server to use domain hierarchy
w32tm /config /syncfromflags:domhier /update
After change time settings, it's normally required to restart time service
Note: If there is time difference, it takes time for the system to bring the difference down depending on how much correct can be made in one step. The change is gradual.